Search found 56 matches

by kai
Tue Apr 12, 2011 7:03 pm
Forum: VTSTTools
Topic: Dimer from NEB...moving away from saddle point?
Replies: 5
Views: 11076

Re: Dimer from NEB...moving away from saddle point?

thanks a lot, Graeme....I will do a further look and update here if i find something interesting
by kai
Thu Apr 07, 2011 6:45 am
Forum: VTSTTools
Topic: Dynamical matrix calculation
Replies: 11
Views: 24992

Re: Dynamical matrix calculation

i didnt try the dynamical matrix calculation; but i tried to use ibrion=5 as a quick test;

the extremely small negative frequencies are generally representing lateral displacment, or translation which are not real; only the one roughly along rxn coordinates, strech of an old bond is real
by kai
Tue Apr 05, 2011 4:08 pm
Forum: VTSTTools
Topic: Dimer from NEB...moving away from saddle point?
Replies: 5
Views: 11076

Re: Dimer from NEB...moving away from saddle point?

Thx a lot, Graeme; here is the calculation; i removed the CHARGE file since its way too big; The geometry of this saddle point should be alright and the climbing NEB managed to converge it down to a force of 0.02 ev/A lately; There is something missing in my mind regarding the parameters in the dime...
by kai
Wed Mar 30, 2011 7:59 pm
Forum: VTSTTools
Topic: Dimer from NEB...moving away from saddle point?
Replies: 5
Views: 11076

Dimer from NEB...moving away from saddle point?

Hello, all I am starting to learn dimer method as a means to achieve a more accurate saddle point; my first trial was running, though showing an unhealthy DIMCAR as: Step Force Torque Energy Curvature Angle 1 0.07200 9.95315 -761.18452 -0.20945 24.31446 1 0.07200 12.68468 -761.18452 1.34022 19.30569...
by kai
Tue Feb 22, 2011 1:17 am
Forum: VTSTTools
Topic: vibration analysis using IBRION=5
Replies: 2
Views: 12907

Re: vibration analysis using IBRION=5

thx, Graeme
by kai
Mon Feb 21, 2011 6:11 am
Forum: VTSTTools
Topic: vibration analysis using IBRION=5
Replies: 2
Views: 12907

vibration analysis using IBRION=5

I am moving on to analyze the vibration after a set of sucessful c-NEB calculation. To my perhaps limited understanding, such a vibration analysis could give me information as: 1) confirm the transition state by giving only one imaginary frequency 2) give pre-factor in arrhenius formula (from imagin...
by kai
Fri Feb 04, 2011 5:08 am
Forum: VTSTTools
Topic: structure fluctuation
Replies: 0
Views: 13287

structure fluctuation

Quite often i am running into a problem with one or two images fluctuating between two clearly resolved states, making the whole NEB calculation not converged to a satisfying extent. I read through the old posts regarding this but still have some questions, calling for professional help. Generally s...
by kai
Fri Feb 04, 2011 4:50 am
Forum: VTSTTools
Topic: LBFGS optimizer II: what did i do is wrong...
Replies: 3
Views: 7454

Re: LBFGS optimizer II: what did i do is wrong...

i guess i figured it out; this is due to the process i am calculating involves two barriers with similar heights; the strategy is to break them apart. also the maxmove in the default is a bit too large for me; i need to lower it down to 0.02 (default 0.2)
by kai
Fri Feb 04, 2011 4:48 am
Forum: VTSTTools
Topic: climbing image tag
Replies: 4
Views: 7939

Re: climbing image tag

indeed, now i managed to converge everything down to 0.02 eV/A by breaking them into two parts for two individual climbing NEB;

Thanks
by kai
Fri Jan 21, 2011 12:16 am
Forum: VTSTTools
Topic: climbing image tag
Replies: 4
Views: 7939

Re: climbing image tag

thx, graeme could you tell me a bit more how it determines to push which image to saddle point in the current versioned neb? is it as simple as pushing the highest energy image at certain iteration? it would be lovely to have such a tag to find all the extremes; but based on my reading of the old po...
by kai
Thu Jan 20, 2011 8:53 am
Forum: VTSTTools
Topic: quickmin vs aggressive optimizers
Replies: 2
Views: 7698

Re: quickmin vs aggressive optimizers

i had suffered similar problem before and it turned out to be related to my pathway involving two barriers with similar heights. if that is what you have, probably its better to break down the calculation
by kai
Thu Jan 20, 2011 8:51 am
Forum: VTSTTools
Topic: climbing image tag
Replies: 4
Views: 7939

climbing image tag

I am now facing a problem that I am suspecting to be related with the "climbing" part of the NEB calculation. My current cacluation seems to show two barriers between my initial and final states. Anoyingly, these two barriers seem to be quite close in energy (~0.1 eV), making it difficulty...
by kai
Tue Jan 04, 2011 2:03 am
Forum: VTSTTools
Topic: doubble nudging
Replies: 2
Views: 6783

Re: doubble nudging

thanks, Graeme; I am testing it and would post the result. This is regarding the molecular dissociation on silicon surface. The whole reaction appears to involve of two separate saddle points en route from initial to final states (two bumps in 1D energy profile). Quite interestingly, these two saddl...
by kai
Sat Jan 01, 2011 7:48 am
Forum: VTSTTools
Topic: doubble nudging
Replies: 2
Views: 6783

doubble nudging

Could anyone tell me a bit more regarding the tag "LDNEB", implemented as a double nudging (variable spring constant)? how vasp would change spring constant if i use this tag to apply to the connection between different images? I am facing a peculiar difficulty to further converge a set of...
by kai
Thu Dec 30, 2010 7:13 pm
Forum: VTSTTools
Topic: Clarification about previous answers
Replies: 7
Views: 16228

Re: Clarification about previous answers

thx, Graeme