Search found 2265 matches
- Thu Apr 20, 2023 4:01 am
- Forum: VTSTTools
- Topic: How NEB works when atoms are fixed?
- Replies: 3
- Views: 6922
Re: How NEB works when atoms are fixed?
Let's forget about the solid state optimization for now - it is not important. So I'm not sure that we are on the same page in terms of how the calculation is done. My suggestion is to find a cell geometry that you are happy with and then fix it - just the cell parameters, not the atoms. Now you can...
- Sat Apr 15, 2023 3:54 pm
- Forum: VTSTTools
- Topic: Questions about DynMat calculation of gas-phase methanol
- Replies: 16
- Views: 28714
Re: Questions about DynMat calculation of gas-phase methanol
Well, I have no information about the system and so I can't say much. Typically, if you relax all of the atoms then you should have positive frequencies, however, if you have all atoms free and you have a nice set of positive frequencies and those three near-zero frequencies, they could correspond t...
- Fri Apr 14, 2023 11:24 pm
- Forum: VTSTTools
- Topic: Questions about DynMat calculation of gas-phase methanol
- Replies: 16
- Views: 28714
Re: Questions about DynMat calculation of gas-phase methanol
I would suggest checking both convergence of the structure and the frequencies as a function of sigma. So what I mean by that is to reduce sigma, re-optimize and then recalculate frequencies and check for convergence. But this is not typically a difficult parameter to converge - as long as you see o...
- Thu Apr 13, 2023 2:30 pm
- Forum: VTSTTools
- Topic: How NEB works when atoms are fixed?
- Replies: 3
- Views: 6922
Re: How NEB works when atoms are fixed?
I'm not sure that I entirely understand the question. There is no sense to an NEB calculation when all the atoms are fixed (with a very small caveat that it is possible to do a solid state optimization of the cell with atoms fixed in relative coordinates). You certainly can have fixed atoms in an NE...
- Thu Apr 06, 2023 12:39 am
- Forum: VTSTTools
- Topic: vasp6.4 and VTST - different from 6.3 instructions?
- Replies: 2
- Views: 6684
Re: vasp6.4 and VTST - different from 6.3 instructions?
First thank you for the note - it is great to have feedback! I think that the instructions for vasp.6.4 are correct. I recently built vasp across quite a few different machines including both for cpu and gpu. Currently, dynamic.F is not being linked in and so does not need to be in the object list. ...
- Wed Apr 05, 2023 9:13 pm
- Forum: VTSTTools
- Topic: Optimizer IOPT=2
- Replies: 4
- Views: 4942
Re: Optimizer IOPT=2
no, just run nebmake.py in the same way that you would nebmake.pl - it will apply the IDPP
- Wed Apr 05, 2023 2:09 pm
- Forum: VTSTTools
- Topic: Optimizer IOPT=2
- Replies: 4
- Views: 4942
Re: Optimizer IOPT=2
Yes, but you may need to set MaxMove to a smallish value to keep the initial steps in the optimization stable.
But better would be to use the nebmake.py script, which will apply the IDPP method and try to keep the bond lengths more constant in your initial band.
But better would be to use the nebmake.py script, which will apply the IDPP method and try to keep the bond lengths more constant in your initial band.
- Mon Apr 03, 2023 1:11 pm
- Forum: VTSTTools
- Topic: About NEB calculations
- Replies: 2
- Views: 3874
Re: About NEB calculations
You need to reorder the atoms between your initial and final states so that only one atom is moving, rather than half of them.
- Thu Mar 30, 2023 5:09 pm
- Forum: VTSTTools
- Topic: energy of images
- Replies: 15
- Views: 13962
Re: energy of images
it looks reasonable
- Fri Mar 24, 2023 2:31 am
- Forum: VTSTTools
- Topic: energy of images
- Replies: 15
- Views: 13962
Re: energy of images
ok, so use those endpoints.
- Thu Mar 23, 2023 9:57 pm
- Forum: VTSTTools
- Topic: dist.pl script shows different distance values
- Replies: 7
- Views: 5300
Re: dist.pl script shows different distance values
it should work with updates in these two files. (just remove the .txt and put the files in your vtstscripts dir)
- Thu Mar 23, 2023 1:20 pm
- Forum: VTSTTools
- Topic: energy of images
- Replies: 15
- Views: 13962
Re: energy of images
Take image 01 and 05 and rerelax them with ISYM=0 to make sure that you have the lowest energy endstates.
- Thu Mar 23, 2023 9:29 am
- Forum: VTSTTools
- Topic: energy of images
- Replies: 15
- Views: 13962
Re: energy of images
Try turning symmetry off for your endpoints. (ISYM=0)
- Thu Mar 23, 2023 4:47 am
- Forum: VTSTTools
- Topic: energy of images
- Replies: 15
- Views: 13962
Re: energy of images
No, the drop in energy between the band images and the endpoints (likely) indicates that you have different settings in the two calculations. If you post the full calculations of both the endpoints and the NEB, I can take a look and see what's going on.
- Thu Mar 16, 2023 6:58 pm
- Forum: VTSTTools
- Topic: dist.pl script shows different distance values
- Replies: 7
- Views: 5300
Re: dist.pl script shows different distance values
Vesta is correct; I will fix our script and report back when it is done.