Search found 2259 matches

by graeme
Mon Dec 12, 2022 11:56 pm
Forum: VTSTTools
Topic: Migration barrier
Replies: 6
Views: 4635

Re: Migration barrier

It is certainly true that a process with a 4 eV barrier will not occur at room temperature. If you want to upload the calculation, I can take a look at it. There are lots of ways to mess up a calculation and get an unphysical result.
by graeme
Wed Nov 16, 2022 9:00 pm
Forum: eOn
Topic: Max_rate implementation in EON
Replies: 2
Views: 38414

Re: Max_rate implementation in EON

If you can make the simulation results available to me, I can take a look.
by graeme
Thu Nov 03, 2022 12:19 am
Forum: VTSTTools
Topic: OUTCAR File Reading
Replies: 2
Views: 3189

Re: OUTCAR File Reading

That's a good question. I expect that you didn't run the endpoints with a vasp code with our vtstcode linked in, but if you are willing to post it, I can verify that.
by graeme
Mon Oct 10, 2022 4:52 pm
Forum: VTSTTools
Topic: Problem compiling instanton.F
Replies: 12
Views: 16483

Re: Problem compiling instanton.F

It looks to me as if you don't have our vtstcode copied to your source code directory. The change in main.F will correspond to a change in the CHAIN_FORCE call in our chain.F file. Following the directions here, https://theory.cm.utexas.edu/vtsttools/installation.html , you need to copy our vtst cod...
by graeme
Sun Oct 02, 2022 2:43 pm
Forum: VTSTTools
Topic: Reaction path for the charged adsorbates system
Replies: 2
Views: 4604

Re: Reaction path for the charged adsorbates system

Well, as you say, many of these questions are scientific in nature rather than technical. I can, however, try to answer some of the technical points. First, I would have no expectation of the energy going up or down when you include the implicit solvation model. It is certainly strange to have a tra...
by graeme
Wed Sep 28, 2022 1:19 am
Forum: eOn
Topic: How to optimizes the atom positions and box at the same time
Replies: 4
Views: 20247

Re: How to optimizes the atom positions and box at the same time

That is a good question/comment. TSASE has code for solid-solid phase transitions, using any ASE calculator including LAMMPS and VASP. For concerted phase transitions, cell changes are essential. We have also studied solid-solid phase transitions using EON, but in that case, it is entirely modeled b...
by graeme
Thu Sep 22, 2022 6:55 pm
Forum: VTSTTools
Topic: Can we do nonlinear interpolation?
Replies: 7
Views: 7337

Re: Can we do nonlinear interpolation?

First, I want to clarify that IDPP path will formally be different from the linear path. The issue is that we have a default fmax convergence criterion for the IDPP method so that if the bond lengths roughly change linearly in the linear path, the IDPP method can converge without changing the path. ...
by graeme
Thu Sep 22, 2022 6:47 pm
Forum: VTSTTools
Topic: neb2dim.pl ZERO DISTANCE BETWEEN IMAGES
Replies: 2
Views: 3772

Re: neb2dim.pl ZERO DISTANCE BETWEEN IMAGES

I'm not sure that the error message accurately reflects the problem. The key issues that I see from your files is that you need to do an NEB calculation and run nebresults.pl before running neb2dim.pl. The neb2dim.pl script needs to read the energies of the images and the interpolated extrema in ord...
by graeme
Thu Sep 22, 2022 2:03 pm
Forum: eOn
Topic: How to optimizes the atom positions and box at the same time
Replies: 4
Views: 20247

Re: How to optimizes the atom positions and box at the same time

This may be a problem with the documentation; we do not have support for cell relaxation in EON.
by graeme
Tue Sep 20, 2022 8:15 pm
Forum: VTSTTools
Topic: Can we do nonlinear interpolation?
Replies: 7
Views: 7337

Re: Can we do nonlinear interpolation?

Ok, I've looked into this and the IDPP force is lower than the default convergence of 0.05 eV/Ang even with the initial linear path. If I lower that convergence force, the IDPP path changes a bit, but not significantly. I think it is all working properly.
by graeme
Tue Sep 20, 2022 2:51 am
Forum: VTSTTools
Topic: Can we do nonlinear interpolation?
Replies: 7
Views: 7337

Re: Can we do nonlinear interpolation?

I will take a closer look tomorrow, but my guess is that the linear interpolation is a minimum for the IDPP method.
by graeme
Tue Sep 13, 2022 7:40 pm
Forum: VTSTTools
Topic: Convergence issue with NEB
Replies: 14
Views: 8544

Re: Convergence issue with NEB

Yes, those are on the bottom face and being duplicated on the top face before relaxation.
by graeme
Tue Sep 13, 2022 7:17 pm
Forum: VTSTTools
Topic: Convergence issue with NEB
Replies: 14
Views: 8544

Re: Convergence issue with NEB

I expect that atoms that are precisely on the boundary (such as the yellow atom on the corners) are shown on all of the corners. If that atom relaxes, it will only be shown in one location (top-right) instead of on all 8 corners.
by graeme
Sun Sep 11, 2022 9:39 pm
Forum: VTSTTools
Topic: Convergence issue with NEB
Replies: 14
Views: 8544

Re: Convergence issue with NEB

That is more of a scientific question rather than a technical one. The nice thing about a constant volume is that you benefit from cancelation of errors in terms of the plane wave basis and kpoint sampling. However, when changes in the cell volume are important, then they should be considered.
by graeme
Sat Sep 10, 2022 3:39 am
Forum: VTSTTools
Topic: Convergence issue with NEB
Replies: 14
Views: 8544

Re: Convergence issue with NEB

Check that the settings on the endpoints are the same as the band. You will (almost certainly) find that they are different. Note: I put OUTCAR files in 00 and 08, which need to be consistent with the settings of your NEB calculation.