.. _debug:

=====
Debug
=====

[Debug] Options
===============

**save_stdout**: Save the standard output from the client to a file named stdout_0.dat

    default: ``False``

**interactive_shell**:

    default: ``True``

**result_files_path**: Where to store all result files. Defaults to 'debug_results'.

    default: ``./debug_results/``

**use_mean_time**: Select transition times from the mean of the exponential distribution of escape times.

    default: ``False``

**register_extra_results**: Register processes found for a state after leaving that state.

    default: ``False``

**target_trajectory**: Follow the state-to-state trajectory of another akmc simulation.

    default: ``False``

**keep_bad_saddles**: Keep data about bad saddles. If true, the result files for failed saddle searches are kept in the badprocdata directory within the state directory for that search.

    default: ``False``

**keep_all_result_files**: Stores all result files in main_directory/results

    default: ``False``

**write_movies**: Output a movie of the calculation

    default: ``False``

**write_movies_interval**: Write a movie frame every write_movie_intervals steps.

    default: ``1``