Search found 56 matches

by kai
Wed Mar 07, 2012 9:09 pm
Forum: VTSTTools
Topic: dimer calculation error message
Replies: 3
Views: 14906

Re: dimer calculation error message

you are right....it is the electronic convergence...thx
by kai
Wed Mar 07, 2012 7:54 am
Forum: VTSTTools
Topic: dimer calculation error message
Replies: 3
Views: 14906

dimer calculation error message

Hey, there, I am running a dimer in DFT-D and start to see some error message that i dont understand; any insight would be helpful. Simply put, this is from the transition state of a set of pre-converged NEB calculation (0.05 eV/A) and the out info as follows: running on 64 nodes distr: one band on ...
by kai
Tue Feb 28, 2012 6:08 pm
Forum: VTSTTools
Topic: nebmake.pl works only orthorhombic cell?
Replies: 2
Views: 7027

Re: nebmake.pl works only orthorhombic cell?

my apology...i picked up the wrong file....yes...it does work nicely....sorry
by kai
Tue Feb 28, 2012 7:11 am
Forum: VTSTTools
Topic: nebmake.pl works only orthorhombic cell?
Replies: 2
Views: 7027

nebmake.pl works only orthorhombic cell?

i am wondering if the standard nebscripts works only for orthorhombic supercell ( three supcell vector orthorhombic perpendicular to each other)? I had a great experience using, for example, nebmake.pl to do calculations for orthorhombic supercell , eg POSCAR: xxx 1.00000000000000000 15.361248016357...
by kai
Fri Sep 23, 2011 3:46 pm
Forum: VTSTTools
Topic: VASP 5.2.11 with Dynamical Matrix
Replies: 3
Views: 8897

Re: VASP 5.2.11 with Dynamical Matrix

yes, we do have this problem and it appears to be associated with the writing of OSZICAR at the very last step in dynmatrix, giving error and a strange core file. Based on OUTCAR, the calculation has finished nicely.

i will upload the attachment soon and great thanks
by kai
Mon Sep 05, 2011 11:20 pm
Forum: VTSTTools
Topic: visualise movie.xyz
Replies: 2
Views: 9364

Re: visualise movie.xyz

vmd could certainly do this frame by frame
by kai
Sat Aug 27, 2011 6:37 am
Forum: VTSTTools
Topic: quick min algorithem; peridoic spikes
Replies: 3
Views: 10680

Re: quick min algorithem; peridoic spikes

Could you elaborate a bit more regarding making smaller dynamic step in the IOPT=3 setting? I belieave you are referring to the tag of Timestep? Do you think it is a good idea to reduce Maxmove? This is a typical curve i got using nebconverge.pl; with a spike initially at 0.5 eV/A, and later to 0.03...
by kai
Fri Aug 26, 2011 9:43 pm
Forum: VTSTTools
Topic: quick min algorithem; peridoic spikes
Replies: 3
Views: 10680

quick min algorithem; peridoic spikes

Hello, everyone, I am running an NEB calculation using the Austin versioned quick min (default setting); while it runs reasonably, but i am puzzled when i looked at the progression of the force using nebconverge.pl script and saw a very periodic force spikes of every7-8 ionic steps. I am wondering w...
by kai
Fri Aug 26, 2011 9:37 pm
Forum: VTSTTools
Topic: DYNAMICAL MATRIX reference
Replies: 2
Views: 19305

Re: DYNAMICAL MATRIX reference

Thanks and we really appreciate this
by kai
Fri Aug 26, 2011 9:36 pm
Forum: VTSTTools
Topic: VASP 5.2.11 with Dynamical Matrix
Replies: 3
Views: 8897

Re: VASP 5.2.11 with Dynamical Matrix

No, we still have the problem; we will get back to u soon and great thanks
by kai
Wed Aug 24, 2011 5:48 am
Forum: VTSTTools
Topic: DYNAMICAL MATRIX reference
Replies: 2
Views: 19305

DYNAMICAL MATRIX reference

Dear Prof. Henkelman,

could you please tell me how to reference DYNAMICAL MATRIX in a manuscript that is about to be out? we used this method to do zero-point energy correction.

with regards,

Kai
by kai
Wed Aug 24, 2011 5:44 am
Forum: VTSTTools
Topic: optimizer for CNEB
Replies: 1
Views: 6503

Re: optimizer for CNEB

personally my favorite one is FIRE. use quick min with a small displacement 'maxmove=0.02' for 30 steps until the force is down to ~1ev/A; and then move to more powerful alogrithem with large displacement.
by kai
Wed Aug 24, 2011 5:42 am
Forum: VTSTTools
Topic: EDIFFG = -0.1 is enough for CNEB to find the barrier?
Replies: 2
Views: 10873

Re: EDIFFG = -0.1 is enough for CNEB to find the barrier?

i have to add some here regarding this since i was puzzled at this for a while; the simple anwser is: it depends; i did comparable calculations using CINEB for C2H5Br and C4H9Br on Silicon and found that the TS geometry converged for C2 at ediffg=0.1, but not for C4. C4 converges when ediffg=0.02 is...
by kai
Wed Aug 17, 2011 5:11 am
Forum: VTSTTools
Topic: CI-NEB in DFT+D2
Replies: 1
Views: 6521

Re: CI-NEB in DFT+D2

a quick post note: My favourite optimizer in standard DFT, FIRE is behaving rather strange with the DFT+D2; the austin versioned quick min seems to work reasonably
by kai
Mon Aug 15, 2011 5:44 am
Forum: VTSTTools
Topic: CI-NEB in DFT+D2
Replies: 1
Views: 6521

CI-NEB in DFT+D2

Dear all, I am wondering if anyone has ever tried to run CI-NEB calculations with the DFT-D2 method (Grimme's vdW method); It appears that i am struggling with this method to run an CI-NEB to a very satisfying way; the force could only get down to 0.1 eV/A. And all the tricks i had based on standard...