Search found 117 matches

by andri
Tue Sep 18, 2007 4:29 pm
Forum: Bader
Topic: Bader with Gaussian cube reference
Replies: 7
Views: 17151

Thanks Johannes, this looks excellent.
by andri
Tue Sep 18, 2007 4:26 pm
Forum: Bader
Topic: Charges on molecules with high symmetry
Replies: 2
Views: 8126

Have you tried to play around with the mesh density?
by andri
Sat Jul 07, 2007 11:06 am
Forum: VTSTTools
Topic: Runtime I/O error in neb.F (neb.f90)
Replies: 3
Views: 10363

Thanks for pointing this out. I guess it was a pretty obvious, and embarrassing, error.
by andri
Wed Jun 13, 2007 7:33 am
Forum: VTSTTools
Topic: Questions about nebresult.pl
Replies: 10
Views: 24073

That's odd, I just ran nebresults.pl on the files you sent me and everything worked fine. Are you using the latest version of the scripts? I have now updated the nebconverge.pl so that *Forces* now reads *FORCES*. Couple of points: 1) You should have the elements in the first line of the POSCAR, tha...
by andri
Tue Jun 12, 2007 5:56 pm
Forum: VTSTTools
Topic: Questions about nebresult.pl
Replies: 10
Views: 24073

Can you send me (moller.plesset@gmail.com) all your files from the NEB run?
by andri
Tue Jun 12, 2007 12:08 pm
Forum: VTSTTools
Topic: Questions about nebresult.pl
Replies: 10
Views: 24073

Ok, I think I see what the problem is. The nebconverge.pl script is looking for "Forces: m", but VASP is writing out "FORCES: m". So if you change this in the script then it should work.

Report back if it does so the cvs version can be updated.
by andri
Sat Jun 09, 2007 7:20 am
Forum: VTSTTools
Topic: Questions about nebresult.pl
Replies: 10
Views: 24073

Well, it seems like that for some reason your job didn't start up properly. Did the other VASP files get generated, e.g. XDATCAR, WAVECAR, CHGCAR etc.? If not, then this problem probably has nothing to do with vtstcode but with how VASP is compiled on your system.
by andri
Fri Jun 08, 2007 2:37 pm
Forum: VTSTTools
Topic: Questions about nebresult.pl
Replies: 10
Views: 24073

1) I would think the 0.1 should be an absolute upper limit on EDDIFG, but I agree that 0.001 can be very optimistic. Usually I start with 0.05, then starting from the previously converged run, I set it to 0.01, then 0.005 etc. until I think the path is properly converged. 2) I am little bit confused...
by andri
Wed Jun 06, 2007 4:20 am
Forum: VTSTTools
Topic: about neb calculation
Replies: 1
Views: 6291

This has nothing to do with VTSTTools!
by andri
Thu May 17, 2007 5:28 pm
Forum: VTSTTools
Topic: Is it a saddle points???
Replies: 3
Views: 9155

I am a little bit confused as to why you think your configuration is a minimum. According to your DIMCAR, your initial configuration starts out slightly too high in energy, which is perfectly reasonable. As the calculation progresses, the energy is lowered as the system approaches the saddle point. ...
by andri
Wed May 16, 2007 8:31 pm
Forum: VTSTTools
Topic: Is it a saddle points???
Replies: 3
Views: 9155

It looks like a saddle point to me, i.e.:

1) Force is low (and getting smaller)
2) Torque is vanishing.
3) Curvature is negative.

So, smells like a saddle point!
by andri
Thu Apr 26, 2007 8:22 pm
Forum: VTSTTools
Topic: NEB analysis, convergence?
Replies: 6
Views: 15275

If the path is curved then 5 A is probably too large of a distance between the images. Remember that the neighboring images are used in a 'finite' difference way to estimate the local tangent. Personally, I prefer never to have the distance exceed 1 A, and try very hard to have it close to 0.5 A. So...
by andri
Mon Apr 23, 2007 10:31 pm
Forum: VTSTTools
Topic: NEB analysis, convergence?
Replies: 6
Views: 15275

Using for instance the *dist.pl* script, what is the distance between the images? Also, have you tried to generate a .xyz movie (nebmovie.pl) from the the current CONTCARs? Is there something funny going in with the path?

I would perhaps decrease EDIFF to 1.0E-4.
by andri
Mon Apr 23, 2007 9:22 pm
Forum: VTSTTools
Topic: NEB analysis, convergence?
Replies: 6
Views: 15275

What is the output from *nebef.pl*?
by andri
Thu Apr 12, 2007 4:43 pm
Forum: VTSTTools
Topic: compile vasp with new neb code
Replies: 5
Views: 12770

Did your old executable have all the necessary libraries build statically into it? Try to run "ldd <old_executable>" and "ldd <new_executable>" and see if there is any difference.