Search found 2258 matches

by graeme
Mon Feb 20, 2023 6:01 pm
Forum: Bader
Topic: Error message "some volume not assigned"
Replies: 5
Views: 30628

Re: Error message "some volume not assigned"

If you can make a problematic AECCAR0 and AECCAR2 and the CHGCAR available, I can take a look at it.
by graeme
Sun Feb 19, 2023 10:46 pm
Forum: VTSTTools
Topic: High Migration Energy Barrier
Replies: 6
Views: 4695

Re: High Migration Energy Barrier

My biggest concern is that you have relaxed the endpoints with ISIF=3 and the band with ISIF=2; the band has different lattice constants from the endpoints. Make sure you use the same settings and ideally the same code (they are with different versions of vasp) for the end point relaxation and the N...
by graeme
Tue Feb 14, 2023 2:29 am
Forum: VTSTTools
Topic: High Migration Energy Barrier
Replies: 6
Views: 4695

Re: High Migration Energy Barrier

I can not see the final geometries in your calculation, but I can see from your plot that this calculation is not converged and basically the calculation has gone bad. Try an initial run with TIMESTEP=0.01 until the forces drop below 1 eV/Ang. Check that things are reasonable and then continue with ...
by graeme
Tue Jan 31, 2023 2:26 am
Forum: VTSTTools
Topic: RELAXATION EXPLOSION
Replies: 3
Views: 5745

Re: RELAXATION EXPLOSION

It's pretty common to have high initial forces which can lead to unstable optimization. I recommend using a conservative optimizer in this case, such as IBRION=3 POTIM=0.01. You will likely just need about 10-20 iterations for the forces to drop to about 1 eV/Ang. Then you can go back to whatever op...
by graeme
Sat Jan 28, 2023 4:58 pm
Forum: VTSTTools
Topic: Movies in .xyz format
Replies: 9
Views: 21949

Re: Movies in .xyz format

I am not an expert on this. Of course you can just post the xyz or XDATCAR file for others to view, but if you want an actual movie, maybe try jmol, vmd, or vesta. My students will know better than I will about how to make fancy movies.
by graeme
Tue Jan 24, 2023 3:09 pm
Forum: VTSTTools
Topic: Migration barrier
Replies: 6
Views: 4209

Re: Migration barrier

The use of high temperature is just a trick to find possible diffusion mechanisms. If your material is active at 650 K on a time scale of seconds, that would imply a diffusion barrier of around 1.5 eV. But of course, you can only simulate maybe 10 ps, so if you want to see that same 1.5 eV barrier, ...
by graeme
Thu Jan 19, 2023 6:40 pm
Forum: VTSTTools
Topic: Creating Initial and Final POSCARs for NEB calculation>
Replies: 3
Views: 3010

Re: Creating Initial and Final POSCARs for NEB calculation>

Just keep it simple. Relax the molecule above the surface for the initial state and then the dissociated fragments on the surface for the final state. Then connect them with a band, check to make sure that it looks reasonable, and then run the NEB.
by graeme
Wed Jan 18, 2023 9:26 pm
Forum: VTSTTools
Topic: Creating Initial and Final POSCARs for NEB calculation>
Replies: 3
Views: 3010

Re: Creating Initial and Final POSCARs for NEB calculation>

This is a good question. In principle there are many possible product states from a given initial state. Typically, what you would do to study a reaction like to describe is to start by optimizing the CH3COOCH3 molecule above the surface. That optimized structure can be your initial state. Then you ...
by graeme
Mon Jan 16, 2023 5:22 pm
Forum: VTSTTools
Topic: Interpolated Images at Constant V
Replies: 1
Views: 3469

Re: Interpolated Images at Constant V

We do do have a way to do that.
by graeme
Mon Jan 16, 2023 5:17 pm
Forum: VTSTTools
Topic: How to use the script?
Replies: 10
Views: 41614

Re: How to use the script?

The SSNEB is implemented in our vtstcode, which can be linked into your vasp binary. If a change in the cell along a path is detected, it will be used by default.
by graeme
Mon Jan 16, 2023 5:15 pm
Forum: VTSTTools
Topic: Migration barrier
Replies: 6
Views: 4209

Re: Migration barrier

Goodness, normally I can find simple problems with simple solutions. In this case, your initial and starting points looks reasonable, the band converged nicely, but the energy barrier is just very high. Unfortunately, I don't have a simple solution for you. One thing I would check is just to converg...
by graeme
Fri Dec 30, 2022 4:45 pm
Forum: Bader
Topic: Units in ACf.dat
Replies: 1
Views: 16227

Re: Units in ACf.dat

The charge is in units of e and the volume is in units of Ang^3.

In terms of meaning, the charge gives you a measure of the number of electrons associated with eon atomic center. The charge is integrated in the Bader volume around each atom.
by graeme
Thu Dec 29, 2022 5:28 pm
Forum: VTSTTools
Topic: How Does VTST Define Saddle Point When There Are Multiple Saddle Points
Replies: 2
Views: 2979

Re: How Does VTST Define Saddle Point When There Are Multiple Saddle Points

Yes, I think that all of your statements are correct. For a path with intermediate minimum, it is best to minimize a nearby image to get an accurate energy of the intermediate minimum. You can also then run an NEB between the intermediate minimum and a final state to find the energy of a lower energ...
by graeme
Wed Dec 14, 2022 6:28 pm
Forum: VTSTTools
Topic: How to use the script?
Replies: 10
Views: 41614

Re: How to use the script?

You can just use nebmake.pl for the initial path and then use the SSNEB to converge the path.
by graeme
Mon Dec 12, 2022 11:56 pm
Forum: VTSTTools
Topic: Migration barrier
Replies: 6
Views: 4209

Re: Migration barrier

It is certainly true that a process with a 4 eV barrier will not occur at room temperature. If you want to upload the calculation, I can take a look at it. There are lots of ways to mess up a calculation and get an unphysical result.